PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g37800.7.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 531aa    MW: 58449.8 Da    PI: 8.2285
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g37800.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.9e-17164213155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Bradi2g37800.7.p 164 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 213
                       78*******************......55************************997 PP

2AP240.28.5e-13256306155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+ +k  grW+A+   +     +k+++lg f+ + eAa+a+++a+ k +g
  Bradi2g37800.7.p 256 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 306
                       89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-16164222IPR016177DNA-binding domain
PfamPF008476.3E-9164213IPR001471AP2/ERF domain
CDDcd000187.33E-11165223No hitNo description
PROSITE profilePS5103217.794165221IPR001471AP2/ERF domain
SMARTSM003803.3E-32165227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-17165222IPR001471AP2/ERF domain
CDDcd000183.72E-24256316No hitNo description
PfamPF008476.5E-8256306IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-16256315IPR016177DNA-binding domain
PROSITE profilePS5103215.277257314IPR001471AP2/ERF domain
SMARTSM003801.8E-31257320IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-15257314IPR001471AP2/ERF domain
PRINTSPR003676.1E-6258269IPR001471AP2/ERF domain
PRINTSPR003676.1E-6296316IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MELDLNVEEK LPMAAAARSE SGTSESSVLN GETSAAAEEG SSSTPPPPMR AALEFSILRA  60
EGENDVGDED EEEEATPSPP WPPLQQQLVT RELFPSAMAA GSGPPPQQHW AELGFFRPPP  120
PQPVDVRFLQ HAHAPPPGPP PPPPPAAQPP PAKKSRRGPR SRSSQYRGVT FYRRTGRWES  180
HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF NLSDYEDDMK QMKGLSKEEF  240
VHVLRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK YIYLGLFDNE VEAARAYDKA  300
AIKCNGREAV TNFEPSTYEG ELLTEVTSEG ADVDLNLSIS QPASQSPKRD KNSHGLQLHH  360
GSLQGSEVKR AKIDAPSELA ALPHRQYPLL AEHPPIWPGQ SYPIFLNNEG AAREQHIRRP  420
EVGIGGVPSW AWRHHQDSPK LPPRQLPPPP HRPHSGSRCP FSPLRRFSGF RSCAGAVSCS  480
GLGSWLYFPL LPKRNMFLLS MAFCVVIQSG NSRCRTLANL TTISPSEITL *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231785.10.0PREDICTED: floral homeotic protein APETALA 2 isoform X1
SwissprotP479273e-99AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLI1HMH90.0I1HMH9_BRADI; Uncharacterized protein
STRINGBRADI2G37800.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100832935
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-96related to AP2.7